Chloropicon mariensis str. RCC997

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bioproject_species
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Access to genome browser and other tools for the genome - Pending
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Sample collected
Sample acquired
Data generation
In assembly
Submitted
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  • Scientific name accepted: Chloropicon mariensis str. RCC997
  • Synonym: Chloropicon mariensis
  • Authority: Eikrem & Lopes dos Santos, 2017
  • Phylum: Chlorophyta
  • Genus: Chloropicon
  • Species: Chloropicon mariensis str. RCC997
  • Ploidy: Unknown
  • Common name: No common name known
  • Collect event: CC-Roscoff
  • Coordinator(s): Katell Hervéou
  • Operator(s): Vaulot D. | Marie D.
  • Taxonomist(s): Florence Le Gall
  • Date: Nov. 2, 2004
  • Site (sea): Pacific Ocean
  • Site (region): South East Pacific
  • Latitude: -9.07
  • Longitude: -136.98

No occurrence data available from GBIF

  • ToLID prefix: ucChlMari
  • Chloropicon mariensis str. RCC997 archive: pending
  • Genome data portal (pending)
  • GoaT
  • WoRMS
  • NCBI
  • GBIF (pending)
  • OBIS
  • INPN (pending)
  • OpenObs (pending)
  • ENA BioProject of the sequencing raw data: PRJEB104285
  • ENA BioProject of the genome assembly: PRJEB104286
  • Assembly accession: GCA_977109245
  • EAR report with genome assembly metrics: PDF
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 19.77 Mbp
  • GC content: 49.19%
  • Number of chromosomes: 22
  • Number of scaffolds: 25
  • N50 of scaffolds: 930.87 Kbp
  • L50 of scaffolds: 8
  • Number of contigs: 62
  • N50 of contigs: 623.38 Kbp
  • L50 of contigs: 12
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined