Mantoniella squamata str. RCC395

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Mantoniella squamata str. RCC395
  • Synonym: Mantoniella sp. RCC395
  • Authority: T.V.Desikachary, 1972
  • Phylum: Chlorophyta
  • Genus: Mantoniella
  • Species: Mantoniella squamata str. RCC395
  • Ploidy: Unknown
  • Common name: No common name known
  • Collect event: CC-Roscoff
  • Coordinator(s): Katell Hervéou
  • Operator(s): Florence Le Gall
  • Taxonomist(s): Florence Le Gall
  • Date: July 11, 2000
  • Site (sea): Atlantic Ocean
  • Site (region): Roscoff
  • Latitude: 48.75
  • Longitude: -3.95

No occurrence data available from GBIF

  • ToLID prefix: ucManSpea
  • Mantoniella squamata str. RCC395 archive: pending
  • Genome data portal (pending)
  • GoaT
  • WoRMS
  • NCBI
  • GBIF (pending)
  • OBIS
  • INPN (pending)
  • OpenObs (pending)
  • ENA BioProject of the sequencing raw data: PRJEB101455
  • ENA BioProject of the genome assembly: PRJEB101456
  • Assembly accession: GCA_977861565
  • EAR report with genome assembly metrics: PDF
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 61.34 Mbp
  • GC content: 58.42%
  • Number of chromosomes: 18
  • Number of scaffolds: 24
  • N50 of scaffolds: 4.13 Mbp
  • L50 of scaffolds: 7
  • Number of contigs: 29
  • N50 of contigs: 3.21 Mbp
  • L50 of contigs: 7
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined